Journal of Forensic and Legal Medicine
Volume 15, Issue 8 , Pages 519-523 , November 2008

Population data on 10 non-CODIS STR loci in Japanese population using a newly developed multiplex PCR system

  • H. Asamura, PhD MD (Senior Assistant Professor)

      Affiliations

    • Corresponding Author InformationCorresponding author. Tel.: +81 0263 37 3218; fax: +81 0263 37 3084.
  • ,
  • M. Ota, PhD (Senior Assistant Professor)
  • ,
  • H. Fukushima, PhD MD (Professor)

Received 21 February 2008 ,Accepted 9 April 2008.

References 

  1. Maniatis T, Fritsch EF, Sambrook J. Molecular cloning: a laboratory manual. Cold Spring Harbour, New York: Cold Spring Harbour Laboratory; 1989.
  2. Raymond M, Rousset F. GENEPOP (version 3.4): populations genetics software for exact tests and ecumenicism. J Hered. 1995;86:248–249
  3. Lareu MV, Barral S, Salas A, Pestoni C, Carracedo A. Sequence variation of a hypervariable short tandem repeat at the D1S1656 locus. Int J Legal Med. 1998;111:244–247
  4. Leopoldino AM, Pena SD. The mutational spectrum of human autosomal tetranucleotide microsatellites. Hum Mutat. 2002;21:71–79
  5. Wiegand P, Schneider HR, Schurenkamp M, Kleiber M, Brinkmann B. Tetranucleotide STR system D8S1132: sequencing data and population genetic comparisons. Int J Legal Med. 1998;111:180–182
  6. Stein C, Lange T, Ferencik S, Grosse-Wilde H, Henβge C. German population data of three tetrameric short tandem repeat loci – D3S1744, D12S1090 and D18S849. Forensic Sci Int. 1998;91:103–107
  7. Mertens G, Mommers N, Boutrand L, Gielis M, Vandenberghe A. Flemish population data and sequence structure of the hypervariable tetranucleotide repeat locus D12S1090. Int J Legal Med. 2001;115:40–44
  8. Choi M, Kim JH, Lee DH, Lee SH, Rho HM. Frequency data on four tetrameric STR loci D18S1270, D14S608, D16S3253 and D21S1437 in a Korean population. Int J Legal Med. 2000;113:179–180
  9. Lareu MV, Barral S, Salas A, Carracedo A. Sequence variation of a variable short tandem repeat at the D18S535 locus. Int J Legal Med. 1998;111:337–339
  10. De Stefano F, Casarino L, Costa MG, Bruni G, Mannucci A, Unseld M, et al. Analysis of a short tandem repeat locus on chromosome 19 (D19S253). Int J Legal Med. 1996;108:256–258
  11. Ohtaki H, Yamamoto T, Yoshimoto T, Uchihi R, Ooshima C, Katsumata Y, et al. A powerful, novel, multiplex typing system for six short tandem repeat loci and the allele frequency distributions in two Japanese regional populations. Electrophoresis. 2002;23:3332–3340
  12. Becker D, Vogelsang D, Brabetz W. Population data on the semen short tandem repeat loci D4S2366, D6S474, D14S608, D19S246, D20S480, D21S226 and D22S689 in a German population. Int J Legal Med. 2007;121:78–81
  13. Reich DE, Cargill M, Bolk S, Ireland J, Sabeti PC, Richter DJ, et al. Linkage disequilibrium in the human genome. Nature. 2001;411:199–204
  14. Service SK, Ophoff RA, Freimer NB. The genome-wide distribution of background linkage disequilibrium in a population isolate. Hum Mol Genet. 2001;10:545–551
  15. Weiss KM, Clark AG. Linkage disequilibrium and the mapping of complex human traits. Trends Genet. 2002;18:19–24
  16. Smith JR, Carpten JD, Brownstein MJ, Ghosh S, Magnuson VL, Gilbert DA, et al. Approach to genotyping errors caused by nontemplated nucleotide addition by Taq DNA polymerase. Genome Res. 1995;5:312–317
  17. Ginot F, Bordelais I, Nguyen S, Gyapay G. Correction of some genotyping errors in automated fluorescent microsatellite analysis by enzymatic removal of one base overhangs. Nucleic Acids Res. 1996;24:540–541
  18. Brownstein MJ, Carpten JD, Smith JR. Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. Biotechniques. 1996;20:1004–1010
  19. Shin CH, Lee JB, Lee YS. Allele frequencies and genetic data of 16 highly polymorphic loci in Koreans. Forensic Sci Int. 2004;141:189–192
  20. Bhoopat T, Sriduangkaew S, Steger HF. STR loci D10S2325, D16S539 and D19S253: northern Thai population data. Legal Med. 2006;8:306–307
  21. Sun XM, Fang YQ, Yun LB, Bai P, Li ZR, Zhang J. Population genetics of two STR loci D2S1346 and D2S1353 in a Han population of Chinese. J Forensic Sci. 2006;51:705
  22. Tian YF, Zhao JH, Zhang HB, Zhu BF, Lai JH. Genetic profile of five STR loci D2S1338, D8S1179, D14S306, D19S253 and D18S535 in a Chinese population. J Forensic Sci. 2005;50:245
  23. Wiegand P, Lareu MV, Schurenkamp M, Kleiber M, Brinkmann B. D18S535, D1S1656, and D10S2325: three efficient short tandem repeats for forensic genetics. Int J Legal Med. 1999;112:360–363
  24. Schmid D, Anslinger K, Rolf B. Allele frequencies of the ACTBP2 (=SE33), D18S51, D8S1132, D12S391, D2S1360, D3S1744, D5S2500, D7S1517, D10S2325 and D21S2055 loci in a German population sample. Forensic Sci Int. 2005;151:303–305

PII: S1752-928X(08)00069-3

doi: 10.1016/j.jflm.2008.04.001

Journal of Forensic and Legal Medicine
Volume 15, Issue 8 , Pages 519-523 , November 2008